Publications
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Simon J Cockell, Jochen Weile, Phillip Lord, Claire Wipat, Dmytro Andriychenko, Matthew Pocock, Darren Wilkinson,
Malcolm Young and Anil Wipat (2010)
An integrated dataset for in silico drug discovery,
Journal of Integrative Bioinformatics, 7(3):116, 2010.
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Hassani-Pak, K., Legaie, R., Canevet, C., van den Berg, H.A., Moore, J.D., Rawlings, C. J. (2010)
Enhancing Data Integration with Text Analysis to Find Genes Implicated in Plant Stress Response,
Journal of Integrative Bioinformatics, 7(3):121, 2010.
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Raheel Nawaz, Paul Thompson, John McNaught, Sophia Ananiadou (2010)
Meta-Knowledge Annotation of Bio-Events,
7th international conference on Language Resources and Evaluation (LREC), Malta.
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Artem Lysenko, Matthew Hindle, Jan Taubert, Mansoor Saqi and Christopher Rawlings
(2009) "Data integration for plant genomics -- exemplars from the integration of Arabidopsis thaliana databases",
Briefings in Bioinformatics 2009 10: 676-693.
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Jan Taubert, Matthew Hindle, Artem Lysenko, Jochen Weile, Jacob Kohler and Christopher Rawlings
(2009) "Linking life sciences data using graph-based mapping", Proceedings of Data Integration in the Life Sciences (DILS) 2009.
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Robert Pesch, Artem Lysenko, Matthew Hindle, Keywan Hassani-Pak, Ralf Thiele, Christopher Rawlings, Jacob Köhler and Jan Taubert
(2008) "Graph-based sequence annotation using a data integration approach", Journal of Integrative Bioinformatics, 5(2):94, 2008.
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Jan Taubert, Klaus Peter Sieren, Matthew Hindle, Berend Hoekman, Rainer Winnenburg, Stephan Philippi, Chris Rawlings,
Jacob Köhler (2007)
"The OXL format for the exchange of integrated datasets", Journal of Integrative Bioinformatics, 4(3):62, 2007.
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J Taubert, M Hindle, B Hoekman, R Winnenburg, J Weile, K P Sieren, J Baumbach, S Ernst, S Elsner, K Hassani-Pak, A Lysenko,
S Philippi, T Yates, P Verrier, C Rawlings and J Köhler (2007)
"The ONDEX data integration framework", Accepted Talk - The 8th annual Bioinformatics Open Source Conference
(BOSC 2007)
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Jacob Köhler, Stephan Philippi, Michael Specht and Alexander Rüeg (2006)
"Ontology based text indexing and querying for the semantic web", Knowledge-Based Systems, Volume 19, Issue 8
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Jacob Köhler, Jan Baumbach, Jan Taubert, Michael Specht, Andre Skusa, Alexander Rüegg, Chris Rawlings,
Paul Verrier and Stephan Philippi (2006)
"Graph-based analysis and visualization of experimental results with ONDEX", Bioinformatics 22(11)
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Skusa, A., Rüegg, A., Köhler, J. (2005)
"Extraction of biological networks from scientific literature", Briefings in Bioinformatics 6(3)
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Köhler, J., Rawlings, C., Verrier, P., Mitchell, R., Skusa, A., Rüegg, A. and Philippi, S. (2004),
"Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalized Data Structures",
In Silico Biol, Volume 5, Special Issue: Ontology and Genome, Manuscript number in online journal: 0005.
How to cite Ondex
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