Data formats

Construction of integrated datasets in Ondex system is mediated by a workflow engine, Ondex Integrator. The Integrator tool allows users to create and manage sequential networks that mediates import, merging, analysis and export. The support of different format is therefore provided via a diverse collection of plugins. Datasets in Ondex format can be viewed in Ondex Frontend - an itneractive graph visualisation tool. Ondex fronted offeres additional export options to most common vector and raster image formats.

Database/tool-specific formats Generic import formats Export formats
Data Export:
  • DOT
  • GraphML
  • Prolog
  • SBML-2 (limited functionality)
  • RDF
  • OWL2 (limited functionality)
  • Tab
  • XHTML
Graphics Export:
  • BMP
  • EPS
  • JPEG
  • PDF
  • PNG
  • SVG