Key technical features

  • Ondex technology

    • Java J2SE 6.0
    • Oracle Berkeley DB Java Edition
    • Apache CXF SOAP framework
    • Apache Lucene text search engine

  • Ondex plugins and workflows

    • Import databases and experimental datasets
    • Merge them
    • Export as an Ondex graph
    • Export as other formats (e.g. tab-delimited file)

  • Ondex User Interface

    • Import an Ondex graph or use the user interface to compose a workflow and run your data integration
    • Visualise the integrated data
    • Use available layouts, filters and annotators to analyse the data
    • Export annotated graphs as images

  • Web services and Taverna

    • Ondex Web services available from Taverna

  • Text mining and NaCTeM